Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ATAC-seq
  • 59total RNA-seq
  • 18ChIP-seq
  • 11single cell RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 88DNA accessibility
  • 70Transcription
  • 18DNA binding
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 168August, 2021
  • 14May, 2023
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 82bed narrowPeak
  • 64xls
  • 60txt
  • 20bigWig
  • 10tsv
  • 3bed bedgraph
  • 3hic
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 188Homo sapiens
Biosample type
  • 147tissue
  • 34cell line
  • 7in vitro differentiated cells
Organ
  • 144kidney
  • 31liver
  • 5pancreas
  • 4connective tissue
Project
  • 188AMP
Genome assembly (visualization)
  • 77GRCh38
  • 26hg19
Lab
  • 142Katalin Susztak, Upenn
  • 38Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
files.file_type!!
  • csv
BIOSAMPLE
ASSAY

188 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney75491161
islet of Langerhans212
cell line
HepG2918211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego