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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ATAC-seq
  • 59total RNA-seq
  • 18ChIP-seq
  • 11single cell RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 85DNA accessibility
  • 70Transcription
  • 18DNA binding
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 168August, 2021
  • 14May, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 82bed narrowPeak
  • 64xls
  • 60txt
  • 20bigWig
  • 10tsv
  • bed bedgraph
  • 3hic
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 185Homo sapiens
Biosample type
  • 147tissue
  • 34cell line
  • 4in vitro differentiated cells
Organ
  • 144kidney
  • 31liver
  • 5pancreas
  • 4connective tissue
Project
  • 185AMP
Genome assembly (visualization)
  • 77GRCh38
  • 23hg19
Lab
  • 142Katalin Susztak, Upenn
  • 38Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
files.file_type!
  • bed bedgraph
BIOSAMPLE
ASSAY

185 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney75491161
islet of Langerhans212
cell line
HepG2918211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
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