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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
14
ATAC-seq
11
single cell RNA-seq
7
snATAC-seq
5
STARR-seq
4
ChIP-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
70
Transcription
21
DNA accessibility
4
3D chromatin structure
4
DNA binding
1
DNA sequencing
Target of assay
4
control
Date released
88
August, 2021
14
May, 2023
2
March, 2019
1
February, 2023
1
July, 2025
1
October, 2017
Available data
bed narrowPeak
64
xls
60
txt
20
bigWig
11
tsv
3
bed bed3+
3
bed bedgraph
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
tbi
1
vcf
Organism
106
Homo sapiens
Biosample type
84
tissue
20
cell line
3
in vitro differentiated cells
Organ
80
kidney
17
liver
5
pancreas
2
connective tissue
1
musculature of body
Project
107
AMP
Genome assembly (visualization)
14
GRCh38
8
hg19
Lab
78
Katalin Susztak, Upenn
24
Bing Ren, UCSD
3
Struan F.A. Grant, CHOP
2
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
STARR-seq
ChIP-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
11
11
6
1
islet of Langerhans
1
2
2
skeletal muscle tissue
1
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
osteoblast
1
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