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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
59
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
ChIP-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
70
Transcription
4
3D chromatin structure
4
DNA binding
1
DNA sequencing
Target of assay
4
control
Date released
152
August, 2021
14
May, 2023
2
March, 2019
Available data
82
bed narrowPeak
64
xls
60
txt
bigWig
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
168
Homo sapiens
Biosample type
146
tissue
20
cell line
2
in vitro differentiated cells
Organ
144
kidney
17
liver
4
pancreas
2
connective tissue
Project
168
AMP
Genome assembly (visualization)
76
GRCh38
6
hg19
Lab
142
Katalin Susztak, Upenn
24
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
168 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
ChIP-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
1
1
2
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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