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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
18
ChIP-seq
10
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
3
single cell RNA-seq
2
Capture-C
1
whole genome sequencing assay
Assay category
85
DNA accessibility
18
DNA binding
13
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
111
August, 2021
14
May, 2023
2
March, 2019
1
October, 2017
Available data
82
bed narrowPeak
64
xls
txt
20
bigWig
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
128
Homo sapiens
Biosample type
90
tissue
34
cell line
4
in vitro differentiated cells
Organ
87
kidney
31
liver
5
pancreas
4
connective tissue
Project
128
AMP
Genome assembly (visualization)
77
GRCh38
23
hg19
Lab
85
Katalin Susztak, Upenn
38
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
txt
BIOSAMPLE
ASSAY
128 results
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ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
single cell RNA-seq
Capture-C
whole genome sequencing assay
tissue
kidney
75
6
1
3
islet of Langerhans
2
1
2
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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