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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 59total RNA-seq
  • 18ATAC-seq
  • 18ChIP-seq
  • 11single cell RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 70Transcription
  • 24DNA accessibility
  • 18DNA binding
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 104August, 2021
  • 14May, 2023
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 82bed narrowPeak
  • xls
  • 60txt
  • 20bigWig
  • 10tsv
  • 3bed bedgraph
  • 3hic
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 124Homo sapiens
Biosample type
  • 83tissue
  • 34cell line
  • 7in vitro differentiated cells
Organ
  • 80kidney
  • 31liver
  • 5pancreas
  • 4connective tissue
Project
  • 124AMP
Genome assembly (visualization)
  • 26hg19
  • 13GRCh38
Lab
  • 78Katalin Susztak, Upenn
  • 38Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
files.file_type!
  • xls
BIOSAMPLE
ASSAY

124 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney49111161
islet of Langerhans122
cell line
HepG2918211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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