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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
7
ATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
snATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
August, 2021
3
February, 2023
2
March, 2019
1
July, 2025
1
October, 2017
Available data
20
bigWig
18
bed narrowPeak
11
tsv
3
bed bed3+
3
bed bedgraph
3
txt
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bedpe
1
fastq
1
tbi
1
vcf
Organism
46
Homo sapiens
Biosample type
34
cell line
7
in vitro differentiated cells
6
tissue
Organ
31
liver
5
pancreas
4
connective tissue
2
kidney
1
musculature of body
Project
47
AMP
Genome assembly (visualization)
25
hg19
3
GRCh38
Lab
Katalin Susztak, Upenn
38
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
2
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Hi-C
Capture-C
snATAC-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
2
2
skeletal muscle tissue
1
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