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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
50
total RNA-seq
11
single cell RNA-seq
7
snATAC-seq
3
Hi-C
3
STARR-seq
2
Capture-C
Assay category
89
DNA accessibility
61
Transcription
3
3D chromatin structure
Date released
137
August, 2021
14
May, 2023
3
February, 2023
2
March, 2019
1
July, 2025
1
October, 2017
Available data
68
bed narrowPeak
64
xls
60
txt
6
bigWig
3
bed bed3+
3
bed bedgraph
2
hic
2
tsv
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
fastq
1
tbi
Organism
157
Homo sapiens
Biosample type
148
tissue
7
in vitro differentiated cells
3
cell line
Organ
144
kidney
liver
5
pancreas
4
connective tissue
1
musculature of body
Project
158
AMP
Genome assembly (visualization)
78
GRCh38
11
hg19
Lab
142
Katalin Susztak, Upenn
7
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
2
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
158 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
STARR-seq
Capture-C
tissue
kidney
75
49
11
6
1
islet of Langerhans
2
1
2
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HEK293T
2
Synthesized DNA
1
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