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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80ATAC-seq
  • 58total RNA-seq
  • 18ChIP-seq
  • 11single cell RNA-seq
  • 7snATAC-seq
  • 5STARR-seq
  • 2Capture-C
  • 2Hi-C
  • 1whole genome sequencing assay
Assay category
  • 87DNA accessibility
  • 69Transcription
  • 18DNA binding
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 166August, 2021
  • 14May, 2023
  • 3February, 2023
  • 1July, 2025
Available data
  • 82bed narrowPeak
  • 64xls
  • 60txt
  • 19bigWig
  • 10tsv
  • 3bed bed3+
  • 3bed bedgraph
  • 2hic
  • 1bedpe bed3+
  • 1tbi
  • 1vcf
Organism
  • 183Homo sapiens
Biosample type
  • 143tissue
  • 34cell line
  • 7in vitro differentiated cells
Organ
  • 144kidney
  • 31liver
  • pancreas
  • 4connective tissue
  • 1musculature of body
Project
  • 184AMP
Genome assembly (visualization)
  • 76GRCh38
  • 23hg19
Lab
  • 142Katalin Susztak, Upenn
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

184 results

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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney75491161
skeletal muscle tissue1
cell line
HepG2918211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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