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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ATAC-seq
  • 18ChIP-seq
  • 6snATAC-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 88DNA accessibility
  • 18DNA binding
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 96August, 2021
  • 11May, 2023
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 82bed narrowPeak
  • 64xls
  • 20bigWig
  • 3bed bedgraph
  • 3hic
  • 3txt
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 113Homo sapiens
Biosample type
  • 86tissue
  • 20cell line
  • 7in vitro differentiated cells
Organ
  • 82kidney
  • 20liver
  • 4connective tissue
  • 4pancreas
Project
  • 113AMP
Genome assembly (visualization)
  • 77GRCh38
  • 26hg19
Lab
  • 82Katalin Susztak, Upenn
  • 23Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

113 results

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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney7561
islet of Langerhans22
cell line
HepG21811
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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