Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
18
ChIP-seq
6
snATAC-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
88
DNA accessibility
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
96
August, 2021
11
May, 2023
3
February, 2023
2
March, 2019
1
October, 2017
Available data
82
bed narrowPeak
64
xls
20
bigWig
3
bed bedgraph
3
hic
3
txt
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
113
Homo sapiens
Biosample type
86
tissue
20
cell line
7
in vitro differentiated cells
Organ
82
kidney
20
liver
4
connective tissue
4
pancreas
Project
113
AMP
Genome assembly (visualization)
77
GRCh38
26
hg19
Lab
82
Katalin Susztak, Upenn
23
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
113 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
75
6
1
islet of Langerhans
2
2
cell line
HepG2
18
1
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
Download