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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78ATAC-seq
  • 58total RNA-seq
  • 18ChIP-seq
  • 11single cell RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 2Hi-C
  • 1whole genome sequencing assay
Assay category
  • 84DNA accessibility
  • 69Transcription
  • 18DNA binding
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 162August, 2021
  • 14May, 2023
  • 3February, 2023
Available data
  • 80bed narrowPeak
  • 64xls
  • 60txt
  • 17bigWig
  • 9tsv
  • 3bed bedgraph
  • 2hic
  • 1bedpe bed3+
  • 1vcf
Organism
  • 179Homo sapiens
Biosample type
  • 142tissue
  • 34cell line
  • 3in vitro differentiated cells
Organ
  • 144kidney
  • 31liver
Project
  • 179AMP
Genome assembly (visualization)
  • 75GRCh38
  • 19hg19
Lab
  • 142Katalin Susztak, Upenn
  • 34Bing Ren, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

179 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney75491161
cell line
HepG2918211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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