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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
59
total RNA-seq
16
ChIP-seq
11
single cell RNA-seq
4
Hi-C
2
Capture-C
2
snATAC-seq
1
STARR-seq
1
whole genome sequencing assay
Assay category
81
DNA accessibility
70
Transcription
16
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
9
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
158
August, 2021
14
May, 2023
2
March, 2019
1
October, 2017
Available data
78
bed narrowPeak
64
xls
57
txt
15
bigWig
10
tsv
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
175
Homo sapiens
Biosample type
143
tissue
28
cell line
4
in vitro differentiated cells
Organ
138
kidney
27
liver
5
pancreas
4
connective tissue
Project
175
AMP
Genome assembly (visualization)
77
GRCh38
21
hg19
Lab
138
Katalin Susztak, Upenn
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
175 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
Capture-C
snATAC-seq
STARR-seq
whole genome sequencing assay
tissue
kidney
75
49
11
1
2
islet of Langerhans
2
1
2
cell line
HepG2
9
16
1
1
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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