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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 58total RNA-seq
  • 16ChIP-seq
  • 11single cell RNA-seq
  • 3snATAC-seq
  • 2Hi-C
  • 1STARR-seq
  • 1whole genome sequencing assay
Assay category
  • 78DNA accessibility
  • 69Transcription
  • 16DNA binding
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 9transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 152August, 2021
  • 14May, 2023
  • 1July, 2025
Available data
  • 76bed narrowPeak
  • 64xls
  • 57txt
  • 12bigWig
  • 10tsv
  • 2hic
  • 1bed bed3+
  • 1bedpe bed3+
  • 1tbi
  • 1vcf
Organism
  • 166Homo sapiens
Biosample type
  • 139tissue
  • 28cell line
Organ
  • 138kidney
  • 27liver
  • 1musculature of body
Project
  • 167AMP
Genome assembly (visualization)
  • 76GRCh38
  • 14hg19
Lab
  • 138Katalin Susztak, Upenn
  • 28Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

167 results

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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
STARR-seq
whole genome sequencing assay
tissue
kidney75491121
skeletal muscle tissue1
cell line
HepG291611
Synthesized DNA1
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