Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 62accessible chromatin
  • 53gene expression
  • 38candidate regulatory elements
  • 6binding sites
  • 5caQTL
  • 5target gene predictions
  • 1eQTL
Date released
  • 48February, 2024
  • 46August, 2021
  • 38May, 2024
  • 12July, 2025
  • 7February, 2021
  • 6May, 2022
  • 5October, 2022
  • 5September, 2023
  • 3November, 2022
Available data
  • 102bed bed3+
  • 41tsv
  • 34bigWig
  • 25txt
  • 12bed bed3
  • 12bed narrowPeak
Organism
  • 170Homo sapiens
Collection Tags
  • 112DGA
  • 28 T2DKP
  • 26FNIH_projects-heart
  • 21AMP
  • 12FNIH_projects-liver
  • 6ENCODE
  • 3CMDGA
Biosample type
  • 147primary cell
  • 15tissue
  • 7in vitro differentiated cells
  • 1stem cell
Organ
  • 58epithelium
  • 35kidney
  • 26liver
  • 19connective tissue
  • 17vasculature
  • 16musculature of body
  • 14blood vessel
  • 3brain
  • 3lymphatic vessel
  • 2heart
Project
  • 170AMP
Genome assembly (visualization)
  • 114hg19
  • 87GRCh38
Encyclopedia version
  • 1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
  • 1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
  • 1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
  • 1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
  • 1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
  • 1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
  • 1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
  • 1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
  • 1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
  • 1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
  • 1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
  • 1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
software_used.software.name!
  • qTLtools
BIOSAMPLE
TYPE

170 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
binding sites
caQTL
target gene predictions
eQTL
primary cell
endothelial cell of hepatic sinusoid446
endothelial cell4431
hepatocyte551
smooth muscle cell3121
macrophage213
tissue
kidney771
in vitro differentiated cells
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
Human Mesenchymal Cell derived Adipocytes1
Human Mesenchymal Cell derived Osteoblasts1
Progenitor cell of Hypothalamus (neural progenitor cell)1
stem cell
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego