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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
59
total RNA-seq
14
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
88
DNA accessibility
70
Transcription
14
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
164
August, 2021
14
May, 2023
3
February, 2023
2
March, 2019
1
October, 2017
Available data
82
bed narrowPeak
64
xls
60
txt
20
bigWig
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
184
Homo sapiens
Biosample type
147
tissue
30
cell line
7
in vitro differentiated cells
Organ
144
kidney
27
liver
5
pancreas
4
connective tissue
Project
184
AMP
Genome assembly (visualization)
77
GRCh38
26
hg19
Lab
142
Katalin Susztak, Upenn
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
184 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
2
1
2
cell line
HepG2
9
14
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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