Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1707candidate regulatory elements
  • 1356target gene predictions
  • 976histone modifications
  • 912chromatin state
  • 900accessible chromatin
  • 815binding sites
  • 673gene expression
  • 484differential activity
  • 166eQTL
  • 141variant allelic effects
  • 74Fine-mapped variants
  • 8caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2587February, 2021
  • 2508September, 2022
  • 389May, 2021
  • 344February, 2024
  • 333November, 2021
  • 320May, 2026
  • 288June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 95October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 4August, 2017
  • 4March, 2026
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6024bed bed3+
  • 3530tsv
  • 868bed bed9
  • 546bigWig
  • 112txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10825Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2496EpiMap
  • 1845ChIP-Atlas
  • 964ENCODE
  • 612DGA
  • 534AMP
  • 421T1D
  • 405T2DKP
  • 320pyxis
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 151GTEx
  • 141 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5272tissue
  • 2791primary cell
  • 2339cell line
  • 466in vitro differentiated cells
  • 3stem cell
Organ
  • 2904vasculature
  • 2851bodily fluid
  • 2847blood vessel
  • 2840blood
  • 2657vein
  • 951epithelium
  • 669kidney
  • 507connective tissue
  • 479brain
  • 371heart
  • 357musculature of body
  • 310lung
  • 300pancreas
  • 285intestine
  • 244limb
  • 214embryo
  • 203skin of body
  • 185liver
  • 171large intestine
  • 146extraembryonic component
  • 137adipose tissue
  • 118stomach
  • 109eye
  • 89bone element
  • 86mammary gland
  • 83artery
  • 83small intestine
  • 83uterus
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 60__MARKER__
  • 54lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 10158AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 6929hg19
  • 1908GRCh38
  • 4hg18
biosample_term_name!
  • GM12865
lab.title!
  • Stephen Parker, UMich
BIOSAMPLE
TYPE

10873 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
chromatin state
target gene predictions
binding sites
accessible chromatin
gene expression
histone modifications
variant allelic effects
tissue
whole blood26351
heart37201215141
stomach402111931
kidney29142161017
brain2916318211
primary cell
monocyte286181154
endothelial cell371142825
B cell171086213
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530143
cell line
HeLa-S355531
A549211911812
H1-hESC13911128
K5627231612
MCF-7962513
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4612411
embryonic stem cell11561
cardiomyocytes11
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego