Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1713candidate regulatory elements
  • 1361target gene predictions
  • 977histone modifications
  • 913chromatin state
  • 901accessible chromatin
  • 817binding sites
  • 679gene expression
  • 184eQTL
  • 179differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 8caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2590February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 349February, 2024
  • 333November, 2021
  • 289June, 2020
  • 281September, 2023
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 96October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 32February, 2023
  • 30March, 2024
  • 20October, 2025
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 4August, 2017
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 2March, 2026
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6031bed bed3+
  • 3571tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10572Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 966ENCODE
  • 612DGA
  • 534AMP
  • 421T1D
  • 405T2DKP
  • 276KPMP
  • 219BLUEPRINT
  • 1744DN
  • 151GTEx
  • 141 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 63STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5330tissue
  • 2472primary cell
  • 2347cell line
  • 466in vitro differentiated cells
  • 3stem cell
Organ
  • 2917vasculature
  • 2857bodily fluid
  • 2852blood vessel
  • 2846blood
  • 2657vein
  • 951epithelium
  • 652kidney
  • 473connective tissue
  • 461brain
  • 368musculature of body
  • 310lung
  • 285intestine
  • 276pancreas
  • 259heart
  • 244limb
  • 214embryo
  • 203skin of body
  • 171large intestine
  • 166liver
  • 146extraembryonic component
  • 118stomach
  • 109eye
  • 103adipose tissue
  • 89bone element
  • 86mammary gland
  • 84artery
  • 83small intestine
  • 83uterus
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9912AMP
  • 333ENCODE
  • 276KPMP
  • 60T1D
  • 19LungMap
  • 15community
  • 5ITG
Genome assembly (visualization)
  • 6937hg19
  • 1913GRCh38
  • 4hg18
biosample_term_name!
  • Plasmacytoid Dendritic Cell
lab.title!
  • Stephen Parker, UMich
BIOSAMPLE
TYPE

10620 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
chromatin state
gene expression
target gene predictions
caQTL
eQTL
tissue
whole blood2635
heart372012151
stomach40211193
kidney2914216101
brain291631821
primary cell
monocyte286181
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753014
B cell171086
endothelial cell371142
cell line
HeLa-S355531
A549211911812
H1-hESC1391112
K5627231612
MCF-7962513
in vitro differentiated cells
neural progenitor cell5515410
hematopoietic multipotent progenitor cell191011011
adipocyte461241
embryonic stem cell11561
cardiomyocytes
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego