Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1709candidate regulatory elements
  • 1356target gene predictions
  • 976histone modifications
  • 901accessible chromatin
  • 817binding sites
  • 133eQTL
  • 122variant allelic effects
  • 40chromatin state
  • 13caQTL
  • 3hQTL
  • 2meQTL
  • 2other
  • 2pQTL
  • 2variant to gene
  • 1sQTL
Date released
  • 2412February, 2021
  • 1678September, 2022
  • 331November, 2021
  • 291February, 2024
  • 288June, 2020
  • 285May, 2021
  • 135May, 2020
  • 106January, 2022
  • 101October, 2022
  • 69August, 2021
  • 66January, 2020
  • 56January, 2021
  • 45March, 2020
  • 41November, 2022
  • 38May, 2024
  • 34August, 2017
  • 31February, 2023
  • 18April, 2020
  • 15May, 2022
  • 13November, 2019
  • 9October, 2019
  • 5September, 2023
  • 3September, 2018
  • 2February, 2020
  • 2November, 2020
  • 1April, 2019
  • 1August, 2020
  • 1August, 2022
  • 1June, 2021
Available data
  • 6079bed bed3+
  • 3576tsv
  • 869bed bed9
  • 544bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 6033Homo sapiens
Collection Tags
  • 1847ChIP-Atlas
  • 1666EpiMap
  • 937ENCODE
  • 411AMP
  • 405DGA
  • 392T2DKP
  • 318T1D
  • 1744DN
  • 138BLUEPRINT
  • 111T2D
  • 110 T2DKP
  • 101eQTLCatalogue
  • 77CMDGA
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12HPAP
  • 12ROADMAP
Biosample type
  • 2135cell line
  • 1927tissue
  • 1664primary cell
  • 347in vitro differentiated cells
  • 4stem cell
Organ
  • 557epithelium
  • 347connective tissue
  • 326brain
  • 311kidney
  • 284musculature of body
  • 240lung
  • 231intestine
  • 192bodily fluid
  • 183blood
  • 178embryo
  • 178heart
  • 177limb
  • 171pancreas
  • 169vasculature
  • 168skin of body
  • 139large intestine
  • 126blood vessel
  • 113extraembryonic component
  • 108liver
  • 99eye
  • 94stomach
  • 77uterus
  • 73mammary gland
  • 70bone element
  • 65small intestine
  • 64prostate gland
  • 58adrenal gland
  • 57placenta
  • 55adipose tissue
  • 54lymph node
  • 54penis
  • 51ureter
  • 49artery
  • 40gonad
  • 38thymus
  • 36esophagus
  • 30spinal cord
  • 27spleen
  • 21testis
  • 18lymphoid tissue
  • 18ovary
  • 18thyroid gland
  • 17lymphatic vessel
  • 17vein
  • 15nerve
  • 15skeleton
  • 14bronchus
  • 14mouth
  • 12pituitary gland
  • 11bone marrow
  • 10breast
  • 7tongue
  • 7urinary bladder
  • 7vagina
  • 5trachea
  • 3nose
Project
  • 5669AMP
  • 331ENCODE
  • 60T1D
  • 18LungMap
  • 1ITG
Genome assembly (visualization)
  • 5969hg19
  • 938GRCh38
  • 1hg18
biosample_term_name!
  • basal cell
BIOSAMPLE
TYPE

6079 results

search-icontable-tab-icon
Clear Filters
binding sites
candidate regulatory elements
accessible chromatin
chromatin state
histone modifications
target gene predictions
cell line
HeLa-S35551
A5492119112
H1-hESC139112
K562723112
MCF-796213
tissue
heart3720151
stomach4021131
kidney291421011
brain29163212
lung33171
primary cell
monocyte2861813
CD8-positive, alpha-beta T cell75304
common myeloid progenitor, CD34-positive2714
B cell17106
endothelial cell3711521
in vitro differentiated cells
neural progenitor cell551410
hematopoietic multipotent progenitor cell1910111
adipocyte46141
mesenchymal stem cell33111
T-cell acute lymphoblastic leukemia53
stem cell
H1-hESC
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego