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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
3018
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1248
accessible chromatin
976
histone modifications
944
chromatin state
815
binding sites
685
gene expression
484
differential activity
169
eQTL
141
variant allelic effects
74
Fine-mapped variants
23
caQTL
6
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Date released
2636
February, 2025
2587
February, 2021
2511
September, 2022
1984
July, 2026
389
May, 2021
371
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
March, 2020
119
August, 2021
106
January, 2022
99
October, 2022
89
January, 2020
70
March, 2023
63
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
8051
bed bed3+
3551
tsv
869
bed bed9
546
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
12898
Homo sapiens
Collection Tags
2635
UK_Biobank
2499
EpiMap
1845
ChIP-Atlas
1458
ENCODE-rE2G
966
ENCODE
645
DGA
525
AMP
419
T1D
398
T2DKP
393
HDMA
320
pyxis
281
KPMP
219
BLUEPRINT
174
T2DKP
174
4DN
151
GTEx
133
CATlas
111
T2D
101
eQTLCatalogue
100
CMDGA
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
Biosample type
5939
tissue
3929
primary cell
2558
cell line
514
in vitro differentiated cells
4
stem cell
Organ
3365
blood
2902
vasculature
2861
blood vessel
2853
bodily fluid
2659
vein
950
epithelium
903
brain
753
kidney
517
connective tissue
488
heart
440
lung
385
musculature of body
358
intestine
312
pancreas
296
skin of body
244
limb
240
liver
226
large intestine
215
embryo
174
extraembryonic component
161
eye
141
adipose tissue
140
stomach
111
muscle organ
106
bone element
104
mammary gland
102
adrenal gland
97
placenta
97
small intestine
93
thymus
93
uterus
88
artery
87
prostate gland
73
ureter
64
gonad
64
penis
63
spleen
62
lymph node
60
__MARKER__
49
spinal cord
48
esophagus
47
thyroid gland
32
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
bone marrow
13
pituitary gland
13
urinary bladder
12
tongue
12
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Project
12233
AMP
333
ENCODE
281
KPMP
58
T1D
19
LungMap
17
community
5
ITG
Genome assembly (visualization)
6987
hg19
3903
GRCh38
4
hg18
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
biosample_term_name!
chronic lymphocytic leukemia cell
software_used.software.name!
matrix-eQTL
BIOSAMPLE
TYPE
12946 results
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Clear Filters
target gene predictions
pQTL
candidate regulatory elements
accessible chromatin
histone modifications
chromatin state
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood
2635
1
heart
38
37
5
1
21
1
4
1
2
stomach
42
40
3
1
19
1
1
kidney
28
29
10
2
16
1
7
1
brain
30
29
2
3
18
1
1
2
1
+ See 281 more…
primary cell
monocyte
2
18
86
1
15
4
4
1
2
1
fibroblast
28
3
40
1
10
2
6
endothelial cell
17
3
24
1
2
9
25
2
2
3
CD8-positive, alpha-beta T cell
27
7
4
30
1
3
macrophage
13
3
22
2
17
8
3
2
+ See 560 more…
cell line
A549
33
21
1
1
18
2
HeLa-S3
59
5
3
1