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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
2879
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1248
accessible chromatin
976
histone modifications
944
chromatin state
817
binding sites
685
gene expression
484
differential activity
180
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Date released
2636
February, 2025
2589
February, 2021
2511
September, 2022
1984
July, 2026
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
250
May, 2021
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
7928
bed bed3+
3551
tsv
869
bed bed9
546
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
12775
Homo sapiens
Collection Tags
2635
UK_Biobank
2499
EpiMap
1847
ChIP-Atlas
1458
ENCODE-rE2G
966
ENCODE
534
AMP
507
DGA
421
T1D
406
T2DKP
393
HDMA
320
pyxis
281
KPMP
219
BLUEPRINT
174
4DN
151
T2DKP
151
GTEx
133
CATlas
111
T2D
101
eQTLCatalogue
100
CMDGA
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
Biosample type
5923
tissue
3887
primary cell
2511
cell line
496
in vitro differentiated cells
4
stem cell
Organ
3361
blood
2899
vasculature
2858
blood vessel
2849
bodily fluid
2658
vein
942
epithelium
892
brain
756
kidney
505
connective tissue
485
heart
436
lung
380
musculature of body
352
intestine
312
pancreas
291
skin of body
241
limb
237
liver
221
large intestine
210
embryo
171
extraembryonic component
161
eye
139
adipose tissue
138
stomach
111
muscle organ
106
bone element
102
mammary gland
100
adrenal gland
96
placenta
96
small intestine
92
thymus
91
uterus
86
artery
85
prostate gland
73
ureter
63
gonad
63
penis
62
spleen
61
lymph node
60
__MARKER__
48
esophagus
48
spinal cord
46
thyroid gland
31
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
14
breast
13
bone marrow
13
urinary bladder
12
tongue
12
vagina
5
trachea
4
nose
3
pituitary gland
1
embryonic structure
1
gallbladder
1
pericardium
Project
12108
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Genome assembly (visualization)
6862
hg19
3905
GRCh38
4
hg18
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
biosample_term_name!
head and neck squamous cell carcinoma BICR 16
lab.title!
Jesse Engreitz, Stanford University
BIOSAMPLE
TYPE
12823 results
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Clear Filters
target gene predictions
pQTL
candidate regulatory elements
accessible chromatin
histone modifications
chromatin state
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood
2635
1
heart
38
37
5
1
21
1
4
1
2
stomach
40
40
3
1
19
1
1
kidney
28
29
10
2
16
1
7
1
1
brain
30
29
2
3
18
1
1
2
1
+ See 280 more…
primary cell
monocyte
2
18
86
1
15
4
4
1
2
1
fibroblast
28
3
40
1
10
2
6
endothelial cell
17
3
24
1
2
9
25
2
2
3
CD8-positive, alpha-beta T cell
25
7
4
30
1
3
macrophage
13
3