Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 117target gene predictions
  • 75candidate regulatory elements
  • 35chromatin state
  • 32accessible chromatin
  • 18binding sites
  • 13histone modifications
  • 3eQTL
  • 2gene expression
  • 1variant allelic effects
Date released
  • 102September, 2022
  • 92July, 2026
  • 68February, 2021
  • 10November, 2021
  • 8June, 2020
  • 5May, 2021
  • 4October, 2022
  • 3January, 2022
  • 2March, 2024
  • 1August, 2017
  • 1February, 2024
Available data
  • 260bed bed3+
  • 34bed bed9
  • 5bigWig
  • 2tsv
Organism
  • 296Homo sapiens
Collection Tags
  • 102EpiMap
  • 54ENCODE-rE2G
  • 45ENCODE
  • 38HDMA
  • 35ChIP-Atlas
  • 10AMP
  • 10T2DKP
  • 6DGA
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 2GTEx
Biosample type
  • 171primary cell
  • 86cell line
  • 30tissue
  • 9in vitro differentiated cells
Organ
  • 3365blood
  • 2902vasculature
  • 2861blood vessel
  • 2853bodily fluid
  • 2659vein
  • 949epithelium
  • 903brain
  • 753kidney
  • 518connective tissue
  • 488heart
  • 440lung
  • 386musculature of body
  • 358intestine
  • 319pancreas
  • 296skin of body
  • 244limb
  • 240liver
  • 226large intestine
  • 215embryo
  • 174extraembryonic component
  • 161eye
  • 142adipose tissue
  • 140stomach
  • 111muscle organ
  • 104bone element
  • 104mammary gland
  • 102adrenal gland
  • 97placenta
  • 97small intestine
  • 93thymus
  • 93uterus
  • 88artery
  • 87prostate gland
  • 73ureter
  • 64gonad
  • 64penis
  • 63spleen
  • 62lymph node
  • 60__MARKER__
  • 49spinal cord
  • 48esophagus
  • 47thyroid gland
  • 32ovary
  • 31testis
  • 25nerve
  • 24lymphoid tissue
  • 22skeleton
  • 21lymphatic vessel
  • 21mouth
  • 16bronchus
  • 15breast
  • 13bone marrow
  • 13pituitary gland
  • 13urinary bladder
  • 12tongue
  • 12vagina
  • 5trachea
  • 4nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 286AMP
  • 10ENCODE
Genome assembly (visualization)
  • 199hg19
  • 139GRCh38
biosample_term_name!
  • kidney inner medulla collecting duct principal cell
BIOSAMPLE
TYPE

296 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
variant allelic effects
primary cell
keratinocyte9334121
foreskin keratinocyte6114
foreskin fibroblast661142
dermis blood vessel endothelial cell662
fibroblast of dermis5431
cell line
GM23248121111
RPMI79512211
SK-MEL-52211
iPS DF 19.11221
COLO829211
tissue
lower leg skin462
skin of body2113
suprapubic skin23
skin of forearm11
skin of prepuce of penis11
in vitro differentiated cells
foreskin keratinocyte111
iPS DF 4.7 Cell Line111
dermis microvascular lymphatic vessel endothelial cell11
skin fibroblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego