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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
3018
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1247
accessible chromatin
977
histone modifications
944
chromatin state
817
binding sites
685
gene expression
484
differential activity
141
variant allelic effects
72
Fine-mapped variants
60
eQTL
13
caQTL
5
hQTL
4
sQTL
3
meQTL
3
other
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
2636
February, 2025
2589
February, 2021
2511
September, 2022
1984
July, 2026
389
May, 2021
368
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
March, 2020
127
August, 2021
101
October, 2022
89
January, 2020
64
March, 2023
63
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
38
May, 2024
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
12
July, 2025
9
August, 2018
9
May, 2019
8
April, 2019
5
January, 2022
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
7959
bed bed3+
3525
tsv
869
bed bed9
545
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
12775
Homo sapiens
Collection Tags
2635
UK_Biobank
2499
EpiMap
1848
ChIP-Atlas
1458
ENCODE-rE2G
966
ENCODE
639
DGA
534
AMP
406
T2DKP
393
HDMA
320
T1D
320
pyxis
281
KPMP
219
BLUEPRINT
174
4DN
168
T2DKP
151
GTEx
133
CATlas
94
CMDGA
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
10
T2D
Biosample type
5887
tissue
3867
primary cell
2549
cell line
514
in vitro differentiated cells
4
stem cell
Organ
3365
blood
2899
vasculature
2858
blood vessel
2853
bodily fluid
2659
vein
948
epithelium
886
brain
754
kidney
506
connective tissue
485
heart
439
lung
374
musculature of body
355
intestine
309
pancreas
293
skin of body
242
limb
239
liver
224
large intestine
215
embryo
173
extraembryonic component
160
eye
139
adipose tissue
139
stomach
111
muscle organ
104
bone element
104
mammary gland
101
adrenal gland
96
placenta
96
small intestine
93
thymus
92
uterus
86
prostate gland
85
artery
73
ureter
64
penis
62
lymph node
62
spleen
61
gonad
60
__MARKER__
48
spinal cord
46
thyroid gland
45
esophagus
31
ovary
29
testis
24
lymphoid tissue
24
nerve
22
skeleton
21
lymphatic vessel
20
mouth
16
bronchus
14
breast
13
bone marrow
13
urinary bladder
12
pituitary gland
12
tongue
11
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Project
12112
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
13
community
5
ITG
Genome assembly (visualization)
6995
hg19
3803
GRCh38
4
hg18
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
biosample_term_name!
kidney proximal convoluted tubule epithelial cell
software_used.software.name!
qTLtools
BIOSAMPLE
TYPE
12823 results
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Clear Filters
target gene predictions
pQTL
candidate regulatory elements
accessible chromatin
histone modifications
chromatin state
binding sites
gene expression
differential activity
variant allelic effects
Fine-mapped variants
eQTL
caQTL
hQTL
sQTL
meQTL
other
variant to gene
representative DNase hypersensitivity sites
tissue
whole blood
2635
1
heart
38
37
5
1
21
1
4
1
2
stomach
42
40
3
1
19
1
kidney
28
29
10
2
16
1
7
1
1
head of caudate nucleus
86
+ See 277 more…
primary cell
monocyte
2
18
86
1
15
4
1
2
1
1
fibroblast
28
3
40
1
10
6
endothelial cell
17
3
24
1
2
9
25
2
2
CD8-positive, alpha-beta T cell
27
7
4
30
1
3
T-cell
64
4
+ See 555 more…
cell line
A549
33
21
1
1
18
2
HeLa-S3
59
5
3
1
H1-hESC