Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 85accessible chromatin
  • 84candidate regulatory elements
  • 74target gene predictions
  • 50gene expression
  • 45chromatin state
  • 30binding sites
  • 24eQTL
  • 24histone modifications
  • 16differential activity
  • 16variant allelic effects
  • 8Fine-mapped variants
  • 2pQTL
  • 2sQTL
  • 1caQTL
Date released
  • 114September, 2022
  • 105February, 2021
  • 50November, 2021
  • 19June, 2020
  • 17September, 2023
  • 15February, 2024
  • 15May, 2021
  • 11August, 2021
  • 11October, 2022
  • 10January, 2020
  • 10March, 2025
  • 10May, 2020
  • 10May, 2024
  • 9February, 2020
  • 8March, 2020
  • 7August, 2017
  • 7March, 2023
  • 7November, 2022
  • 6January, 2022
  • 3April, 2020
  • 3November, 2020
  • 2January, 2021
  • 2January, 2025
  • 2May, 2022
  • 2September, 2018
  • 1August, 2018
  • 1February, 2023
  • 1January, 2018
  • 1June, 2021
  • 1October, 2019
Available data
  • 332bed bed3+
  • 75tsv
  • 54bigWig
  • 38bed bed9
  • 7txt
  • 2csv
  • 1bigBed bed9
  • 1bigBed narrowPeak
Organism
  • 461Homo sapiens
Collection Tags
  • 114EpiMap
  • 68AMP
  • 67T2DKP
  • 64DGA
  • 62ChIP-Atlas
  • 58ENCODE
  • 35 T2DKP
  • 15KPMP
  • 12STARNET
  • 10CMDGA
  • 10GTEx
  • 9HPAP
  • 9T1D
  • 6FNIH_projects-heart
  • 6T2D
  • 6eQTLCatalogue
  • 2FNIH_projects-liver
  • 1BLUEPRINT
Biosample type
  • 286primary cell
  • 105tissue
  • 39in vitro differentiated cells
  • 31cell line
Organ
  • 2913vasculature
  • 2859bodily fluid
  • 2848blood
  • 2848blood vessel
  • 2658vein
  • 958epithelium
  • 652kidney
  • 467brain
  • 461connective tissue
  • 380musculature of body
  • 311lung
  • 289intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 163liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 99adipose tissue
  • 89bone element
  • 87mammary gland
  • 84small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 383AMP
  • 50ENCODE
  • 15KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 2T1D
Genome assembly (visualization)
  • 376hg19
  • 127GRCh38
  • 2hg18
biosample_term_name!
  • mesenchymal stem cell
BIOSAMPLE
TYPE

461 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
gene expression
chromatin state
binding sites
eQTL
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
pQTL
sQTL
caQTL
primary cell
fibroblast1634126
pericyte cell103101
osteoblast5222132
fibroblast of lung6442
foreskin fibroblast162142
tissue
adipose tissue27836141
subcutaneous adipose tissue22618214
omental fat pad2522223
subcutaneous abdominal adipose tissue51
cartilage tissue212
in vitro differentiated cells
adipocyte4461611
chondrocyte5
fibroblast11
Adipose SGBS cell line (adipocyte)1
Human Mesenchymal Cell derived Adipocytes1
cell line
GM23248121111
fibroblast of cardiac tissue212
HT1080211
foreskin fibroblast111
adipose tissue derived mesenchymal stem cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego