Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1705candidate regulatory elements
  • 1353target gene predictions
  • 976histone modifications
  • 941chromatin state
  • 910accessible chromatin
  • 816binding sites
  • 688gene expression
  • 188eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 12caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2586February, 2021
  • 2505September, 2022
  • 388May, 2021
  • 375February, 2024
  • 333November, 2021
  • 288June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 127March, 2020
  • 106January, 2022
  • 100October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 48May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 13October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6069bed bed3+
  • 3576tsv
  • 866bed bed9
  • 545bigWig
  • 108txt
  • 39bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10601Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2493EpiMap
  • 1845ChIP-Atlas
  • 964ENCODE
  • 640DGA
  • 534AMP
  • 421T1D
  • 406T2DKP
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 170 T2DKP
  • 151GTEx
  • 110T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5323tissue
  • 2510primary cell
  • 2352cell line
  • 459in vitro differentiated cells
  • 3stem cell
Organ
  • 2913vasculature
  • 2859bodily fluid
  • 2848blood
  • 2848blood vessel
  • 2658vein
  • 958epithelium
  • 652kidney
  • 467brain
  • 461connective tissue
  • 380musculature of body
  • 311lung
  • 289intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 163liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 99adipose tissue
  • 89bone element
  • 87mammary gland
  • 84small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9938AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6983hg19
  • 1906GRCh38
  • 4hg18
biosample_term_name!
  • mesenchymal stem cell
software_used.software.name!!
  • fastqtl
BIOSAMPLE
TYPE

10649 results

search-icontable-tab-icon
Clear Filters
binding sites
candidate regulatory elements
histone modifications
accessible chromatin
chromatin state
target gene predictions
tissue
whole blood2635
heart37201215
stomach40211193
kidney291421610
brain29163182
primary cell
monocyte28618
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753014
B cell171086
endothelial cell37115
cell line
HeLa-S35553
A54921191181
H1-hESC139111
K562723171
MCF-796251
in vitro differentiated cells
neural progenitor cell5515410
hematopoietic multipotent progenitor cell19101101
adipocyte46164
embryonic stem cell1156
cardiomyocytes
stem cell
H1-hESC1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego