Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1713candidate regulatory elements
  • 1361target gene predictions
  • 977histone modifications
  • 943chromatin state
  • 913accessible chromatin
  • 817binding sites
  • 693gene expression
  • 198eQTL
  • 180differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 25caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2590February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 378February, 2024
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 34August, 2017
  • 32February, 2023
  • 30March, 2024
  • 21July, 2025
  • 20October, 2025
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6083bed bed3+
  • 3597tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • bed bed3
  • 12bed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10660Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 966ENCODE
  • 646DGA
  • 534AMP
  • 421T1D
  • 406T2DKP
  • 281KPMP
  • 219BLUEPRINT
  • 174 T2DKP
  • 1744DN
  • 151GTEx
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 63STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5342tissue
  • 2538primary cell
  • 2352cell line
  • 470in vitro differentiated cells
  • 4stem cell
Organ
  • 2918vasculature
  • 2859bodily fluid
  • 2853blood vessel
  • 2848blood
  • 2658vein
  • 960epithelium
  • 652kidney
  • 486connective tissue
  • 466brain
  • 393musculature of body
  • 311lung
  • 289intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 168liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 104adipose tissue
  • 89bone element
  • 87mammary gland
  • 84artery
  • 84small intestine
  • 83uterus
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9997AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 7001hg19
  • 1913GRCh38
  • 4hg18
biosample_term_name!
  • mid-frontal lobe
files.file_type!
  • bed bed3
BIOSAMPLE
TYPE

10708 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
chromatin state
target gene predictions
accessible chromatin
gene expression
histone modifications
binding sites
eQTL
variant allelic effects
tissue
whole blood26351
heart3720121513
stomach4021119311
kidney291421610171
brain29163182112
primary cell
monocyte286181154
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530143
endothelial cell37115292
B cell1710862
cell line
HeLa-S355531
A549211911812
H1-hESC13911128
K5627231712
MCF-7962513
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616411
embryonic stem cell11561
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego