Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 65candidate regulatory elements
  • 42target gene predictions
  • 33chromatin state
  • 10accessible chromatin
  • 6binding sites
  • 5histone modifications
  • 2eQTL
  • 2gene expression
Date released
  • 92September, 2022
  • 44February, 2021
  • 7June, 2020
  • 6November, 2021
  • 5May, 2021
  • 3February, 2024
  • 2August, 2017
  • 2January, 2022
  • 2March, 2024
  • 1March, 2020
  • 1October, 2022
Available data
  • 132bed bed3+
  • 31bed bed9
  • 3bigWig
  • 2tsv
Organism
  • 165Homo sapiens
Collection Tags
  • 93EpiMap
  • 35ENCODE
  • 17ChIP-Atlas
  • 6AMP
  • 6DGA
  • 6T2DKP
  • 24DN
  • 2GTEx
  • 2T1D
  • 2T2D
  • 2eQTLCatalogue
Biosample type
  • 125tissue
  • 34cell line
  • 6primary cell
Organ
  • 2913vasculature
  • 2859bodily fluid
  • 2848blood
  • 2848blood vessel
  • 2658vein
  • 958epithelium
  • 652kidney
  • 480connective tissue
  • 467brain
  • 380musculature of body
  • 311lung
  • 280intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 165large intestine
  • 163liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 99adipose tissue
  • 89bone element
  • 87mammary gland
  • 84small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 159AMP
  • 6ENCODE
Genome assembly (visualization)
  • 161hg19
  • 41GRCh38
biosample_term_name!
  • mucosa of rectum
BIOSAMPLE
TYPE

165 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
tissue
large intestine27141311
sigmoid colon10751
transverse colon85411
colonic mucosa4231
muscle layer of colon422
cell line
HT-29221111
SW480211111
HCT116231
HCT-116 cell112
RKO1111
primary cell
colon epithelial cell33
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego