Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1705candidate regulatory elements
  • 1356target gene predictions
  • 974histone modifications
  • 913chromatin state
  • 900accessible chromatin
  • 814binding sites
  • 677gene expression
  • 184eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 8caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2582February, 2021
  • 2511September, 2022
  • 388May, 2021
  • 349February, 2024
  • 333November, 2021
  • 288June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 96October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 38March, 2025
  • 38May, 2024
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 4August, 2017
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6019bed bed3+
  • 3576tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10543Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1841ChIP-Atlas
  • 964ENCODE
  • 611DGA
  • 534AMP
  • 421T1D
  • 405T2DKP
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 151GTEx
  • 141 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 24FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5308tissue
  • 2473primary cell
  • 2347cell line
  • 458in vitro differentiated cells
  • 3stem cell
Organ
  • 2912vasculature
  • 2857bodily fluid
  • 2847blood vessel
  • 2846blood
  • 2657vein
  • 951epithelium
  • 652kidney
  • 468connective tissue
  • 461brain
  • 363musculature of body
  • 310lung
  • 285intestine
  • 276pancreas
  • 257heart
  • 244limb
  • 214embryo
  • 203skin of body
  • 171large intestine
  • 161liver
  • 146extraembryonic component
  • 118stomach
  • 109eye
  • 98adipose tissue
  • 89bone element
  • 86mammary gland
  • 83small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9880AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6925hg19
  • 1907GRCh38
  • 4hg18
biosample_term_name!
  • neuronal stem cell
lab.title!
  • Stephen Parker, UMich
BIOSAMPLE
TYPE

10591 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
chromatin state
target gene predictions
accessible chromatin
binding sites
variant allelic effects
tissue
whole blood2635
heart37201215
stomach40211193
kidney291421610
brain29163182
primary cell
monocyte28618
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753014
B cell171086
endothelial cell37114
cell line
HeLa-S35553
A54921191181
H1-hESC139111
K562723161
MCF-796251
in vitro differentiated cells
neural progenitor cell5515410
hematopoietic multipotent progenitor cell19101101
adipocyte46124
embryonic stem cell1156
cardiomyocytes
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego