Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Embedding Matrix

Click or enter search terms to filter the experiments included in the matrix.

Embeddings type
  • 50Gene expression
  • 11Accessible chromatin
Date released
  • 31May, 2022
  • 8April, 2025
  • 8June, 2025
  • 4February, 2025
  • 2October, 2024
  • 2September, 2021
  • 1February, 2021
  • 1February, 2023
  • 1March, 2024
  • 1November, 2021
  • 1September, 2020
  • 1September, 2023
Available data
  • 45h5ad
  • 13rds
  • 9tsv
  • 7mtx
  • 1bed bed3
  • 1cloupe
  • 1tbi
Organism
  • 58Homo sapiens
Biosample type
  • 55tissue
  • 5primary cell
Organ
  • 7musculature of body
  • 6connective tissue
  • 5adipose tissue
  • 5liver
  • 5vasculature
  • 4artery
  • 4blood vessel
  • 4heart
  • 4pancreas
  • 3kidney
  • 3lung
  • 2bone element
  • 2epithelium
  • 2intestine
  • 2mouth
  • 1blood
  • 1bodily fluid
  • 1bone marrow
  • 1brain
  • 1eye
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1tongue
  • 1trachea
  • 1uterus
Project
  • 56AMP
  • 2LungMap
  • 2community
  • 1ENCODE
Genome assembly (visualization)
  • 1hg19
biosample_term_name!
  • pancreas
files.file_type!!
  • cloupe
BIOSAMPLE
TYPE

61 results

search-icontable-tab-icon
Clear Filters
Gene expression
Accessible chromatin
tissue
heart5
liver41
artery31
islet of Langerhans13
skeletal muscle31
primary cell
cell1
endothelial cell1
epithelial cell1
immune system1
stromal cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego