Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 145candidate regulatory elements
  • 79target gene predictions
  • 72chromatin state
  • 25accessible chromatin
  • 12eQTL
  • 11gene expression
  • 7Fine-mapped variants
  • 7binding sites
  • 7histone modifications
  • 7variant allelic effects
  • 5caQTL
  • 4differential activity
Date released
  • 201September, 2022
  • 91February, 2021
  • 13February, 2024
  • 9July, 2025
  • 9March, 2020
  • 7November, 2021
  • 6June, 2020
  • 6May, 2021
  • 5February, 2020
  • 5January, 2020
  • 5March, 2025
  • 5May, 2020
  • 5October, 2025
  • 3August, 2017
  • 3October, 2022
  • 2March, 2024
  • 2May, 2019
  • 2May, 2022
  • 1August, 2021
  • 1January, 2022
Available data
  • 275bed bed3+
  • 69bed bed9
  • 25tsv
  • 12bigWig
  • 3bed bed3
  • 3bed narrowPeak
  • 2bigBed bed9
Organism
  • 381Homo sapiens
Collection Tags
  • 201EpiMap
  • 78ENCODE
  • 29DGA
  • 28 T2DKP
  • 19ChIP-Atlas
  • 13T2DKP
  • 12GTEx
  • 11STARNET
  • 9AMP
  • 3T2D
  • 1T1D
  • 1eQTLCatalogue
Biosample type
  • 316tissue
  • 46primary cell
  • 17cell line
  • 2in vitro differentiated cells
Organ
  • 2918vasculature
  • 2859bodily fluid
  • 2853blood vessel
  • 2848blood
  • 2658vein
  • 961epithelium
  • 652kidney
  • 487connective tissue
  • 467brain
  • 381musculature of body
  • 311lung
  • 289intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 168liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 104adipose tissue
  • 89bone element
  • 87mammary gland
  • 84artery
  • 84small intestine
  • 83uterus
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 374AMP
  • 7ENCODE
Genome assembly (visualization)
  • 355hg19
  • 94GRCh38
Encyclopedia version
  • 1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
  • 1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
  • 1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
biosample_term_name!
  • skeletal muscle satellite cell
BIOSAMPLE
TYPE

381 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
eQTL
gene expression
Fine-mapped variants
binding sites
histone modifications
variant allelic effects
caQTL
differential activity
tissue
muscle of arm33161611
muscle of leg2714152
muscle of back281313
psoas muscle7841
gastrocnemius medialis8541
primary cell
skeletal muscle fiber522
type I muscle cell13111
type II muscle cell13111
skeletal muscle cell21111
myotube21
cell line
LHCN-M2211111
A673221
SJCRH302111
in vitro differentiated cells
myotube11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego