Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1100
target gene predictions
798
accessible chromatin
477
gene expression
455
differential activity
364
candidate regulatory elements
210
histone modifications
197
chromatin state
100
binding sites
79
variant allelic effects
53
eQTL
21
caQTL
5
hQTL
5
sQTL
3
meQTL
1
other
Date released
1046
July, 2026
487
September, 2022
456
February, 2021
321
November, 2021
303
May, 2026
281
September, 2023
256
May, 2021
147
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
38
May, 2022
38
May, 2024
37
January, 2022
30
July, 2025
30
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
January, 2025
1
July, 2020
1
June, 2021
1
March, 2024
Available data
2694
bed bed3+
610
tsv
403
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
11
bed bed3
11
bed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
2
csv
Organism
3823
Homo sapiens
Collection Tags
543
ENCODE-rE2G
480
EpiMap
370
HDMA
369
DGA
360
AMP
347
T2DKP
330
T1D
303
pyxis
281
KPMP
216
ChIP-Atlas
211
BLUEPRINT
207
ENCODE
133
CATlas
75
T2DKP
55
HPAP
44
T2D
35
eQTLCatalogue
24
FNIH_projects-heart
15
CMDGA
12
FNIH_projects-liver
12
ROADMAP
6
4DN
1
GTEx
Biosample type
5951
tissue
3868
primary cell
2559
cell line
509
in vitro differentiated cells
4
stem cell
Organ
822
epithelium
466
blood
335
kidney
334
connective tissue
227
brain
196
heart
171
skin of body
169
vasculature
150
pancreas
135
liver
120
blood vessel
74
lung
66
eye
62
musculature of body
57
__MARKER__
50
mammary gland
48
adipose tissue
43
extraembryonic component
42
muscle organ
41
penis
36
thymus
34
artery
25
adrenal gland
24
spleen
23
intestine
22
embryo
22
thyroid gland
20
vein
18
bone element
17
lymphatic vessel
16
bronchus
13
bone marrow
11
esophagus
11
placenta
11
prostate gland
11
stomach
9
bodily fluid
6
large intestine
5
skeleton
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
2
ovary
1
limb
1
pericardium
1
testis
Project
3184
AMP
321
ENCODE
281
KPMP
59
T1D
19
LungMap
4
community
Genome assembly (visualization)
1819
hg19
1787
GRCh38
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
biosample_term_name!
smooth muscle cell
BIOSAMPLE
TYPE
3868 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
accessible chromatin
gene expression
differential activity
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
caQTL
hQTL
sQTL
meQTL
other
primary cell
monocyte
2
18
15
4
86
1
4
2
1
1
fibroblast
28
40
10
3
1
6
2
endothelial cell
17
24
9
25
3
1
2
2
2
3
CD8-positive, alpha-beta T cell
27
4
3
7
30
1
macrophage
13
22
2
17
3
3
8
2
+ See 560 more…
See all biosamples
Download