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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
Available data
49
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
81
Homo sapiens
Biosample type
82
cell line
Organ
77
epithelium
77
pancreas
Project
73
AMP
9
T1D
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
76
inconsistent ontology term
files.file_type!!
csv
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
19
15
6
3
2
2
1
1
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