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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
18
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
6
February, 2023
6
November, 2020
2
August, 2021
2
March, 2020
1
November, 2019
Available data
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
32
Homo sapiens
Biosample type
33
cell line
Organ
28
epithelium
28
pancreas
Project
28
AMP
5
T1D
Genome assembly (visualization)
3
hg19
Lab
22
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
27
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
33 results
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ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
18
6
3
2
2
1
1
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