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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
total RNA-seq
18
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
ChIP-seq
2
HiChIP
Assay category
32
Transcription
18
DNA accessibility
2
DNA binding
Target of assay
3
control
3
nucleotide modification
2
histone
2
histone modification
2
narrow histone mark
Date released
26
February, 2021
21
May, 2021
6
November, 2020
5
February, 2023
5
March, 2020
2
August, 2021
Available data
36
bigWig
34
bam
33
tsv
2
bed narrowPeak
Organism
65
Homo sapiens
Biosample type
65
cell line
Organ
60
epithelium
60
pancreas
Project
56
AMP
9
T1D
Genome assembly (visualization)
36
hg19
34
GRCh38
Lab
54
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
60
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
ChIP-seq
HiChIP
cell line
EndoC_BH1
32
18
6
3
2
2
2
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