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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
18
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
6
February, 2023
6
November, 2020
2
August, 2021
2
March, 2020
Available data
49
bam
48
bigWig
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
47
Homo sapiens
Biosample type
48
cell line
Organ
43
epithelium
43
pancreas
Project
41
AMP
7
T1D
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
37
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
18
15
6
3
2
2
1
1
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