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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
17
ATAC-seq
13
ChIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
31
Transcription
17
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
16
November, 2019
2
August, 2021
1
February, 2023
Available data
45
bam
42
bigWig
31
tsv
12
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
64
Homo sapiens
Biosample type
65
cell line
Organ
65
epithelium
65
pancreas
Project
65
AMP
Genome assembly (visualization)
44
hg19
43
GRCh38
Lab
65
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
64
inconsistent ontology term
month_released!
December, 2018
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
31
17
13
2
1
1
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