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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
15
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
6
February, 2023
3
March, 2020
2
August, 2021
Available data
16
bam
15
bigWig
14
bed narrowPeak
1
bedpe bed3+
1
hic
1
tsv
Organism
42
Homo sapiens
Biosample type
43
cell line
Organ
38
epithelium
38
pancreas
Project
36
AMP
7
T1D
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
38
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
43 results
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ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
19
15
3
2
2
1
1
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