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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
401
Homo sapiens
Biosample type
401
cell line
Organ
401
liver
Project
401
AMP
Genome assembly (visualization)
330
hg19
268
GRCh38
Lab
370
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!!
bed bedgraph
BIOSAMPLE
ASSAY
401 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
1
1
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