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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 9total RNA-seq
  • 2Hi-C
  • 2STARR-seq
  • 2pCHi-C
  • 1whole genome sequencing assay
Assay category
  • 19DNA binding
  • 9Transcription
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 12transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 31August, 2021
  • 1December, 2018
  • 1February, 2021
  • 1May, 2020
  • 1November, 2017
Available data
  • 367fastq
  • bam
  • 332bigWig
  • 308bed narrowPeak
  • 293bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 15tsv
  • 12tagAlign
  • 3tar
  • 1bed bed3
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
  • 1vcf
Organism
  • 35Homo sapiens
Biosample type
  • 35cell line
Organ
  • 35liver
Project
  • 35AMP
Genome assembly (visualization)
  • 16hg19
Lab
  • 31Bing Ren, UCSD
  • 4AMP-T2D consortium
files.file_type!
  • bam
BIOSAMPLE
ASSAY

35 results

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ChIP-seq
total RNA-seq
Hi-C
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whole genome sequencing assay
cell line
HepG21992221
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