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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 71ChIP-seq
  • 14total RNA-seq
  • 2Hi-C
  • 2STARR-seq
  • 2pCHi-C
  • 1WGBS
  • 1whole genome sequencing assay
Assay category
  • 71DNA binding
  • 14Transcription
  • 23D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 60control
  • 9transcription factor
  • 2RNA binding protein
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
  • 1recombinant protein
Date released
  • 66November, 2017
  • 17August, 2021
  • 5January, 2019
  • 2November, 2018
  • 1December, 2018
  • 1February, 2021
  • 1May, 2020
Available data
  • 367fastq
  • 366bam
  • 332bigWig
  • bed narrowPeak
  • 293bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 15tsv
  • 12tagAlign
  • 3tar
  • 1bed bed3
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
  • 1vcf
Organism
  • 93Homo sapiens
Biosample type
  • 93cell line
Organ
  • 93liver
Project
  • 93AMP
Genome assembly (visualization)
  • 26hg19
  • 6GRCh38
Lab
  • 76AMP-T2D consortium
  • 17Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

93 results

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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2711422211
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