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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
360
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
45
November, 2018
28
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
352
fastq
351
bam
314
bigWig
292
bed narrowPeak
280
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
15
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
bigBed bedMethyl
1
hic
1
tagAlign
1
vcf
Organism
382
Homo sapiens
Biosample type
382
cell line
Organ
382
liver
Project
382
AMP
Genome assembly (visualization)
312
hg19
254
GRCh38
Lab
354
AMP-T2D consortium
28
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
382 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
360
14
2
2
2
1
1
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