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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 307ChIP-seq
  • 1ATAC-seq
Assay category
  • 307DNA binding
  • 1DNA accessibility
Target of assay
  • 288transcription factor
  • 81recombinant protein
  • 52RNA binding protein
  • 20chromatin remodeller
  • 16histone
  • 16histone modification
  • 8broad histone mark
  • 8narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 249November, 2017
  • 44November, 2018
  • 14August, 2021
  • 1February, 2021
Available data
  • 367fastq
  • 366bam
  • 332bigWig
  • 308bed narrowPeak
  • 293bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 15tsv
  • 12tagAlign
  • 3tar
  • 1bed bed3
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
  • 1vcf
Organism
  • 308Homo sapiens
Biosample type
  • 308cell line
Organ
  • 308liver
Project
  • 308AMP
Genome assembly (visualization)
  • 304hg19
  • 262GRCh38
Lab
  • 294AMP-T2D consortium
  • 14Bing Ren, UCSD
Audit category:
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

308 results

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