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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
327
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
256
transcription factor
82
recombinant protein
53
control
49
RNA binding protein
20
chromatin remodeller
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
1
other context
1
other post-translational modification
Date released
264
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
316
fastq
315
bam
281
bigWig
264
bed narrowPeak
249
bigBed narrowPeak
55
bed broadPeak
55
bigBed broadPeak
15
tsv
12
tagAlign
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
350
Homo sapiens
Biosample type
350
cell line
Organ
350
liver
Project
350
AMP
Genome assembly (visualization)
279
hg19
245
GRCh38
Lab
319
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
327
14
2
2
2
1
1
1
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