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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
370
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
296
transcription factor
82
recombinant protein
59
control
53
RNA binding protein
20
chromatin remodeller
12
histone
12
histone modification
7
broad histone mark
5
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
359
fastq
358
bam
324
bigWig
301
bed narrowPeak
286
bigBed narrowPeak
51
bed broadPeak
51
bigBed broadPeak
15
tsv
5
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
393
Homo sapiens
Biosample type
393
cell line
Organ
393
liver
Project
393
AMP
Genome assembly (visualization)
322
hg19
261
GRCh38
Lab
362
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
370
14
2
2
2
1
1
1
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