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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
317
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
248
transcription factor
82
recombinant protein
55
control
49
RNA binding protein
15
chromatin remodeller
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
1
other context
1
other post-translational modification
Date released
256
November, 2017
44
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
306
bam
306
fastq
273
bigWig
255
bed narrowPeak
240
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
5
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
340
Homo sapiens
Biosample type
340
cell line
Organ
340
liver
Project
340
AMP
Genome assembly (visualization)
271
hg19
223
GRCh38
Lab
309
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
18
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
317
14
2
2
2
1
1
1
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