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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
9
total RNA-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
WGBS
1
whole genome sequencing assay
Assay category
173
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
135
transcription factor
33
RNA binding protein
20
control
17
histone
17
histone modification
14
chromatin remodeller
9
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
142
November, 2017
31
August, 2021
14
November, 2018
2
February, 2021
1
May, 2020
Available data
165
bigWig
156
bam
156
fastq
151
bed narrowPeak
136
bigBed narrowPeak
52
bed broadPeak
52
bigBed broadPeak
11
tagAlign
10
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
190
Homo sapiens
Biosample type
190
cell line
Organ
190
liver
Project
190
AMP
Genome assembly (visualization)
166
hg19
106
GRCh38
Lab
159
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
whole genome sequencing assay
cell line
HepG2
173
9
2
2
1
1
1
1
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