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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
5
total RNA-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
348
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
276
transcription factor
82
recombinant protein
55
control
51
RNA binding protein
19
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
305
November, 2017
44
November, 2018
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
355
fastq
354
bam
307
bigWig
283
bed narrowPeak
282
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
6
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
358
Homo sapiens
Biosample type
358
cell line
Organ
358
liver
Project
358
AMP
Genome assembly (visualization)
304
hg19
257
GRCh38
Lab
358
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina HiSeq 4000
files.read_length!
30
BIOSAMPLE
ASSAY
358 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
cell line
HepG2
348
5
2
1
1
1
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