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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
367
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
289
transcription factor
82
recombinant protein
60
control
51
RNA binding protein
15
histone
15
histone modification
12
chromatin remodeller
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
42
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
356
fastq
355
bam
321
bigWig
299
bed narrowPeak
284
bigBed narrowPeak
56
bed broadPeak
56
bigBed broadPeak
15
tsv
10
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
390
Homo sapiens
Biosample type
390
cell line
Organ
390
liver
Project
390
AMP
Genome assembly (visualization)
319
hg19
261
GRCh38
Lab
359
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.read_length!
25
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
367
14
2
2
2
1
1
1
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