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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
266
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
210
transcription factor
82
recombinant protein
50
control
39
RNA binding protein
4
chromatin remodeller
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
210
November, 2017
39
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
255
bam
255
fastq
223
bigWig
209
bed narrowPeak
194
bigBed narrowPeak
15
tsv
4
bed broadPeak
4
bigBed broadPeak
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
289
Homo sapiens
Biosample type
289
cell line
Organ
289
liver
Project
289
AMP
Genome assembly (visualization)
221
hg19
185
GRCh38
Lab
258
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
266
14
2
2
2
1
1
1
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