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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
9
total RNA-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
326
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
251
transcription factor
82
recombinant protein
56
control
47
RNA binding protein
17
histone
17
histone modification
10
chromatin remodeller
9
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
271
November, 2017
37
November, 2018
31
August, 2021
2
February, 2021
1
May, 2020
Available data
308
bam
308
fastq
278
bigWig
260
bed narrowPeak
245
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
10
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
342
Homo sapiens
Biosample type
342
cell line
Organ
342
liver
Project
342
AMP
Genome assembly (visualization)
277
hg19
216
GRCh38
Lab
311
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
342 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
326
9
2
2
1
1
1
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