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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
333
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
252
transcription factor
66
recombinant protein
60
control
35
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
321
fastq
320
bam
287
bigWig
264
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
355
Homo sapiens
Biosample type
355
cell line
Organ
355
liver
Project
355
AMP
Genome assembly (visualization)
288
hg19
223
GRCh38
Lab
324
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
355 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
333
14
2
2
2
1
1
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